Useful Functions#

Module to handle abstracted functionalities

Attributes#

`FULL_NAME`
`SHORT_NAME`

`make_path`(paths)	Creates a new path in local system by joining paths, and making any new directories, if
`abbreviate_region`(region_name)	Converts long region names to their associated abbreviations.
`build_label_map`(region_names)	Builds a BIDS compliant label map. Loop through CTAB and convert names to
`weighted_series_sum`(→ numpy.ndarray)	Sum a 4D image series weighted based on time and re-corrected for decay correction.
`weighted_series_sum_over_window_indices`(...)	Computes a weighted series sum over a specified window of indices for a 4D PET image.
`read_plasma_glucose_concentration`(→ float)	Temporary hacky function to read a single plasma glucose concentration value from a file.
`convert_ctab_to_dseg`(ctab_path, dseg_path[, column_names])	Convert a FreeSurfer compatible color table into a BIDS compatible label
`capitalize_first_char_of_str`(→ str)	Capitalize only the first character of a string, leaving the remainder unchanged.
`str_to_camel_case`(→ str)	Take a string and return the string converted to camel case.
`nearest_frame_to_timepoint`(...)	Returns a step function that gets the index of the frame closest to a provided timepoint
`get_average_of_timeseries`(→ ants.ANTsImage)	Get average of a 4D ANTsImage and return as a 3D ANTsImage.
`coerce_outpath_extension`(→ str)	Coerce a path to the same absolute path with a provided filetype extension.

petpal.utils.useful_functions.FULL_NAME = ['Background', 'CorticalGrayMatter', 'SubcorticalGrayMatter', 'GrayMatter', 'gm', 'WhiteMatter',...#

petpal.utils.useful_functions.SHORT_NAME = ['BG', 'CGM', 'SGM', 'GM', 'GM', 'WM', 'WM', 'CSF', 'B', 'ST', 'NB', 'L', 'BS', 'CBM']#