Cli Pib Processing

CLI command for running a basic PiB pipeline on a subject, generating SUVR parametric image and tacs.

Attributes

_PIB_EXAMPLE_

Module Contents

petpal.cli.cli_pib_processing._PIB_EXAMPLE_ = Multiline-String

Show Value

"""
Example:
    - Run a PIB scan through SUVR pipeline:
      'petpal-pib-proc --sub 001 --ses 01 --pet-path ./sub-001/ses-01/pet/sub-001_ses-01_pet.nii.gz
                --anat-path ./sub-001/ses-01/anat/sub-001_ses-01_T1w.nii.gz --seg-path
                ./derivatives/freesurfer/sub-001/ses-01/mri/wmparc.mgz --seg-table-path
                ./dseg.tsv --ref-region-label 8'

    - Only compute SUVR for the range of 30-60 min:
      'petpal-pib-proc --sub 001 --ses 01 --pet-path ./sub-001/ses-01/pet/sub-001_ses-01_pet.nii.gz
                --anat-path ./sub-001/ses-01/anat/sub-001_ses-01_T1w.nii.gz --seg-path
                ./derivatives/freesurfer/sub-001/ses-01/mri/wmparc.mgz --seg-table-path
                ./dseg.tsv --ref-region-label 8 --suvr-start 1800 --suvr-end 3600'
"""