Segmentation Tools
==================

.. py:module:: petpal.preproc.segmentation_tools

.. autoapi-nested-parse::

   Methods applying to segmentations.

   Available methods:
   * :meth:`combine_regions_as_mask`: Merge regions in a segmentation image into a mask with value 1
   * :meth:`resample_segmentation`: Resample a segmentation image to the affine of a 4D PET image.
   * :meth:`vat_wm_ref_region`: Compute the white matter reference region for the VAT radiotracer.




Functions
---------

.. toctree::
   :hidden:

   /autoapi/petpal/preproc/segmentation_tools/combine_regions_as_mask
   /autoapi/petpal/preproc/segmentation_tools/segmentations_merge
   /autoapi/petpal/preproc/segmentation_tools/binarize
   /autoapi/petpal/preproc/segmentation_tools/parcellate_right_left
   /autoapi/petpal/preproc/segmentation_tools/replace_probabilistic_region
   /autoapi/petpal/preproc/segmentation_tools/resample_segmentation
   /autoapi/petpal/preproc/segmentation_tools/vat_wm_ref_region
   /autoapi/petpal/preproc/segmentation_tools/eroded_wm_segmentation
   /autoapi/petpal/preproc/segmentation_tools/vat_wm_region_merge
   /autoapi/petpal/preproc/segmentation_tools/gw_segmentation
   /autoapi/petpal/preproc/segmentation_tools/subcortical_mask
   /autoapi/petpal/preproc/segmentation_tools/calc_vesselness_measure_image
   /autoapi/petpal/preproc/segmentation_tools/calc_vesselness_mask_from_quantiled_vesselness
   /autoapi/petpal/preproc/segmentation_tools/unique_segmentation_labels
   /autoapi/petpal/preproc/segmentation_tools/seg_crop_to_pet_fov

.. autoapisummary::
   :nosignatures:

   petpal.preproc.segmentation_tools.combine_regions_as_mask
   petpal.preproc.segmentation_tools.segmentations_merge
   petpal.preproc.segmentation_tools.binarize
   petpal.preproc.segmentation_tools.parcellate_right_left
   petpal.preproc.segmentation_tools.replace_probabilistic_region
   petpal.preproc.segmentation_tools.resample_segmentation
   petpal.preproc.segmentation_tools.vat_wm_ref_region
   petpal.preproc.segmentation_tools.eroded_wm_segmentation
   petpal.preproc.segmentation_tools.vat_wm_region_merge
   petpal.preproc.segmentation_tools.gw_segmentation
   petpal.preproc.segmentation_tools.subcortical_mask
   petpal.preproc.segmentation_tools.calc_vesselness_measure_image
   petpal.preproc.segmentation_tools.calc_vesselness_mask_from_quantiled_vesselness
   petpal.preproc.segmentation_tools.unique_segmentation_labels
   petpal.preproc.segmentation_tools.seg_crop_to_pet_fov