Cli Pib Processing
==================

.. py:module:: petpal.cli.cli_pib_processing

.. autoapi-nested-parse::

   CLI command for running a basic PiB pipeline on a subject, generating SUVR parametric image and tacs.




Attributes
----------

.. autoapisummary::

   petpal.cli.cli_pib_processing._PIB_EXAMPLE_


Module Contents
---------------

.. py:data:: _PIB_EXAMPLE_
   :value: Multiline-String

   .. raw:: html

      <details><summary>Show Value</summary>

   .. code-block:: python

      """
      Example:
          - Run a PIB scan through SUVR pipeline:
            'petpal-pib-proc --sub 001 --ses 01 --pet-path ./sub-001/ses-01/pet/sub-001_ses-01_pet.nii.gz 
                      --anat-path ./sub-001/ses-01/anat/sub-001_ses-01_T1w.nii.gz --seg-path 
                      ./derivatives/freesurfer/sub-001/ses-01/mri/wmparc.mgz --seg-table-path 
                      ./dseg.tsv --ref-region-label 8'
                       
          - Only compute SUVR for the range of 30-60 min:
            'petpal-pib-proc --sub 001 --ses 01 --pet-path ./sub-001/ses-01/pet/sub-001_ses-01_pet.nii.gz 
                      --anat-path ./sub-001/ses-01/anat/sub-001_ses-01_T1w.nii.gz --seg-path 
                      ./derivatives/freesurfer/sub-001/ses-01/mri/wmparc.mgz --seg-table-path 
                      ./dseg.tsv --ref-region-label 8 --suvr-start 1800 --suvr-end 3600'          
      """

   .. raw:: html

      </details>